Publications

Framework For Reanalysis Of Publicly Available Affymetrix® Genechip® Data Sets Based On Functional Regions Of Interest

E Saka, BJ Harrison, K West, JC Petruska, EC Rouchka

BMC Genomics 18 (Suppl 10), 875, 2017

 

Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets

E Saka, BJ Harrison, K West, JC Petruska, EC Rouchka

Computational Advances in Bio and Medical Sciences (ICCABS), 2016 IEEE 6th …, 2016

Cutaneous tissue damage induces long-lasting nociceptive sensitization and regulation of cellular stress-and nerve injury-associated genes in sensory neurons

KK Rau, CE Hill, BJ Harrison, G Venkat, HM Koenig, SB Cook, ...

Experimental neurology 283, 413-427, 2016

 

Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016

EC Rouchka, JH Chariker, BJ Harrison, JW Park, X Cao, S Pounds, ...

BMC Bioinformatics 17 (10), 297, 2016

 

The Adaptor Protein CD2AP Is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbor Plasticity

BJ Harrison, G Venkat, JL Lamb, TH Hutson, C Drury, KK Rau, MB Bunge, ...

Journal of Neuroscience 36 (15), 4259-4275, 2016

 

Transcriptional changes in sensory ganglia associated with primary afferent axon collateral sprouting in spared dermatome model

BJ Harrison, G Venkat, T Hutson, KK Rau, MB Bunge, LM Mendell, ...

Genomics Data 6, 249-252, 2015

 

Proceedings of the Fourteenth Annual UT-KBRIN Bioinformatics Summit 2015

EC Rouchka, JH Chariker, BJ Harrison

BMC Bioinformatics 16 (Suppl 15), I1, 2015

 

The transcriptional response of neurotrophins and their tyrosine kinase receptors in lumbar sensorimotor circuits to spinal cord contusion is affected by injury severity and …

MT Hougland, BJ Harrison, DSK Magnuson, EC Rouchka, JC Petruska

Plasticity of primary afferent neurons and sensory processing after spinal …, 2015

 

UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm?

BJ Harrison, RM Flight, AM Eteleeb, EC Rouchka, JC Petruska

BMC Bioinformatics 15 (10), P11, 2014

 

Minimum Information About a Spinal Cord Injury Experiment (MIASCI)–a proposed reporting standard for spinal cord injury experiments

VP Lemmon, AR Ferguson, PG Popovich, XM Xu, DM Snow, M Igarashi, ... Journal of neurotrauma, 2014

 

Novel Multi-System Functional Gains via Task Specific Training in Spinal Cord Injured Male Rats

PJ Ward, AN Herrity, RR Smith, A Willhite, BJ Harrison, JC Petruska, ...

Journal of neurotrauma 31 (9), 819-833, 2014

 

categoryCompare, an analytical tool based on feature annotations

RM Flight, BJ Harrison, F Mohammad, MB Bunge, LDF Moon, ...

Frontiers in genetics 5, 98, 2014

 

Molecular and electrophysiological characterization of sensory neurons after muscle incision

K Rau, C Spears, B Harrison, G Venkat, R Johnson, B Cooper, J Petruska

Journal of Pain, The 15 (4), S63-S63, 2014

 

IB4‐binding sensory neurons in the adult rat express a novel 3′ UTR‐extended isoform of CaMK4 that is associated with its localization to axons

BJ Harrison, RM Flight, C Gomes, G Venkat, SR Ellis, U Sankar, JL Twiss, ...

Journal of Comparative Neurology 522 (2), 308-336, 2014

 

An Island-Based Approach for Differential Expression Analysis

AM Eteleeb, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

Proceedings of the International Conference on Bioinformatics, Computational …, 2013

 

Molecular and electrophysiological changes induced by skin incision: implications for the development of chronic pain

K Rau, B Harrison, G Venkat, C Hill, J Petruska

Journal of Pain, The 14 (4), S53-S53, 2013

 

AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities

F Mohammad, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

BMC bioinformatics 13 (1), 229, 2012

 

RNASeq profiling of UTR expression during neuronal plasticity

BJ Harrison, RM Flight, A Eteleeb, EC Rouchka, JC Petruska

BMC Bioinformatics 13 (Suppl 12), A4, 2012

 

A Heuristic Algorithm for Detecting Intercellular Interactions

F Mohammad, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

Bioinformatics and Bioengineering (BIBE), 2011 IEEE 11th International …, 2011

 

Interval Trees for Detection of Overlapping Genetic Entities

F Mohammad, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

Bioinformatics and Bioengineering (BIBE), 2011 IEEE 11th International …, 2011

 

categoryCompare: high-throughput data meta-analysis using gene annotations

RM Flight, JC Petruska, BJ Harrison, EC Rouchka

BMC Bioinformatics 12 (7), A16, 2011

 

Skin incision induces expression of axonal regeneration-related genes in adult rat spinal sensory neurons

CE Hill, BJ Harrison, KK Rau, MT Hougland, MB Bunge, LM Mendell, ...

The Journal of Pain 11 (11), 1066-1073, 2010

 

The alternative splice variant of DAPK-1, s-DAPK-1, induces proteasome-independent DAPK-1 destabilization

Y Lin, C Stevens, B Harrison, S Pathuri, E Amin, TR Hupp

Molecular and cellular biochemistry 328 (1-2), 101-107, 2009

 

Peptide combinatorial libraries identify TSC2 as a death-associated protein kinase (DAPK) death domain-binding protein and reveal a stimulatory role for DAPK in mTORC1 signaling

C Stevens, Y Lin, B Harrison, L Burch, RA Ridgway, O Sansom, T Hupp

Journal of biological chemistry 284 (1), 334-344, 2009

 

An alternative transcript from the death‐associated protein kinase 1 locus encoding a small protein selectively mediates membrane blebbing

Y Lin, C Stevens, R Hrstka, B Harrison, A Fourtouna, S Pathuri, B Vojtesek, ...

FEBS journal 275 (10), 2574-2584, 2008

 

DAPK-1 binding to a linear peptide motif in MAP1B stimulates autophagy and membrane blebbing

B Harrison, M Kraus, L Burch, C Stevens, A Craig, P Gordon-Weeks, ...

Journal of biological chemistry 283 (15), 9999-10014, 2008

 

The MDM2 ubiquitination signal in the DNA-binding domain of p53 forms a docking site for calcium calmodulin kinase superfamily members

AL Craig, JA Chrystal, JA Fraser, N Sphyris, Y Lin, BJ Harrison, MT Scott, ...

Molecular and cellular biology 27 (9), 3542-3555, 2007

The Adaptor Protein CD2AP Is a Coordinator of Neurotrophin Signaling-Mediated Axon Arbor Plasticity

root ganglion reduces pain caused by local inflammatory irritation

K Rau, C Spears, B Harrison, G Venkat, R Johnson, B Cooper, J Petruska

2011 11th IEEE International Conference on Bioinformatics and Bioengineering BIBE 2011

F Mohammad, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

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